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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5441236_5442135_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5441236 - 5442135
Intron Length:
900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTACTCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTTTTATG
Flanking Amino Acid:
QAQEAVSRVKRMQKAAKIKK
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
73
38.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.4
0.62
0.9
73.6
36.6
Minor 5ss
29.5
-2.3
3.8
45.4
49.7
Minor BPS
55.9
0.04
1.7
61.8
41

Associated Gene:

Gene:
APBA2
Ensembl Gene ID:
ENSAPLG00000007575
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045909
5419195 - 5466842
47648
ENSAPLT00000045889
5419195 - 5459617
40423
ENSAPLT00000019960
5423488 - 5459617
36130
ENSAPLT00000007880
5418112 - 5459617
41506