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Intron Name: Anas_platyrhynchos_platyrhynchos_11_5442282_5446812_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5442282 - 5446812

Intron Length:

4531

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

CGTGTCATGTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGTCAT

U12 Branch Point Sequence:

GAGGCAGTAACT

Flanking Amino Acid:

KVSSFPSFVDVPGPCEPEDL

Intron Amino Acid Position:

363

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.8

89.6

24.1

Major BPS

67.1

0.42

1.4

71.4

45.1

Major PPT

64.8

0.33

1.1

62.5

43.1

Minor 5ss

46.3

-0.4

2.8

64.1

41.5

Minor BPS

45.3

-0.2

2.3

63.04

46.5

Associated Gene:

Gene:

APBA2

Ensembl Gene ID:

ENSAPLG00000007575

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019960

5423488 - 5459617

36130

ENSAPLT00000007880

5418112 - 5459617

41506

ENSAPLT00000045909

5419195 - 5466842

47648

ENSAPLT00000045889

5419195 - 5459617

40423

ENSAPLT00000023098

5419195 - 5466842

47648