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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5446850_5448149_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5446850 - 5448149
Intron Length:
1300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TATTTCTCAACA
Flanking Amino Acid:
GPADNNNTPETKKVSSFPSF
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
77.2
32.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
78.6
0.64
0.9
74.5
34.8
Minor 5ss
32.6
-2
3.4
44.1
43.8
Minor BPS
73.1
0.72
1.4
80.8
34.3

Associated Gene:

Gene:
APBA2
Ensembl Gene ID:
ENSAPLG00000007575
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019960
5423488 - 5459617
36130
ENSAPLT00000007880
5418112 - 5459617
41506
ENSAPLT00000045909
5419195 - 5466842
47648
ENSAPLT00000045889
5419195 - 5459617
40423
ENSAPLT00000023098
5419195 - 5466842
47648