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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5520235_5523158_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5520235 - 5523158
Intron Length:
2924

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTTAA
5'SS Class:
major
3'SS Sequence:
TTTCTTTCATAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTCTTTCATA
Flanking Amino Acid:
TGGMHHICIEVDDINAAMAE
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.8
30.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73.7
0.53
1
80.7
30.2
Minor 5ss
45.7
-0.5
2.5
58.1
46.4
Minor BPS
71.1
0.66
1.7
82.68
32.7

Associated Gene:

Gene:
MCEE
Ensembl Gene ID:
ENSAPLG00000007573
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007846
5520023 - 5523467
3445