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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5543306_5544273_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5543306 - 5544273
Intron Length:
968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTACTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
ATTATTTTACTT
Flanking Amino Acid:
ELVEARFLQTESELEDLGEG
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.7
41.8
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
81.5
0.71
0.8
79.2
33.7
Minor 5ss
39.5
-1.2
3.3
57
47.3
Minor BPS
56.9
0.3
1.6
74.03
37.5

Associated Gene:

Gene:
FAN1
Ensembl Gene ID:
ENSAPLG00000007284
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007583
5538435 - 5556044
17610