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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5545530_5546037_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5545530 - 5546037
Intron Length:
508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGGAA
5'SS Class:
major
3'SS Sequence:
GTTTTTCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TGATCCTAAAGC
Flanking Amino Acid:
QIFQDREDLIRYATAAHLSN
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
62.8
37.6
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
78.1
0.63
0.8
73.5
31.7
Minor 5ss
26.8
-2.7
3.7
37.2
47.4
Minor BPS
56.5
0.18
2
67.94
43.4

Associated Gene:

Gene:
FAN1
Ensembl Gene ID:
ENSAPLG00000007284
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007583
5538435 - 5556044
17610