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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5548214_5549722_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5548214 - 5549722
Intron Length:
1509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGTC
5'SS Class:
major
3'SS Sequence:
TGATCTTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTATCTTGATCT
Flanking Amino Acid:
LHQHLKNTKKAIDCIRNGLA
Intron Amino Acid Position:
746

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
74.2
34.5
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
69.3
0.43
1
63.3
42.7
Minor 5ss
43.4
-0.7
3.1
61.2
43.7
Minor BPS
62.7
0.48
1.7
81.82
39.5

Associated Gene:

Gene:
FAN1
Ensembl Gene ID:
ENSAPLG00000007284
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007583
5538435 - 5556044
17610