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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5552415_5554141_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5552415 - 5554141
Intron Length:
1727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTTTA
5'SS Class:
major
3'SS Sequence:
CCTTGTCATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
CTGTGTTTACCT
Flanking Amino Acid:
IPDVFRNSYQTVPLDLYTDS
Intron Amino Acid Position:
892

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
77.1
34.2
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
75.1
0.57
0.9
68.7
36.4
Minor 5ss
42.8
-0.8
3
58.7
45.7
Minor BPS
50.4
0.09
2.1
70.68
46.8

Associated Gene:

Gene:
FAN1
Ensembl Gene ID:
ENSAPLG00000007284
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007583
5538435 - 5556044
17610