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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5554830_5555577_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5554830 - 5555577
Intron Length:
748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCGTGT
5'SS Class:
weak_major
3'SS Sequence:
CATTTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTTAATCAATC
Flanking Amino Acid:
VWSTHSNHFKLVEVKGPNDR
Intron Amino Acid Position:
1000

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.2
63
43.8
Major BPS
84.4
0.85
1
84
34.5
Major PPT
86.2
0.81
0.8
80.7
30.8
Minor 5ss
50.4
0.01
2.9
73.6
43
Minor BPS
49.3
-0
2
66.18
38.9

Associated Gene:

Gene:
FAN1
Ensembl Gene ID:
ENSAPLG00000007284
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007583
5538435 - 5556044
17610