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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5561350_5561878_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5561350 - 5561878
Intron Length:
529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTATG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGGTATTTATTT
Flanking Amino Acid:
GAVKTFKRSKKNYSSTLRGA
Intron Amino Acid Position:
491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1.1
81.8
38.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.2
0.88
0.7
85.2
29.3
Minor 5ss
44.9
-0.5
2.6
59.7
44.8
Minor BPS
51.7
0.13
1.8
69.25
42.2

Associated Gene:

Gene:
MTMR10
Ensembl Gene ID:
ENSAPLG00000006723
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007015
5560750 - 5593899
33150