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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5562062_5562975_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5562062 - 5562975
Intron Length:
914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TTACTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTGTACTTGAGT
Flanking Amino Acid:
CPHQRVKESTEFAISKNIQL
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
74.7
35.4
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
85.9
0.81
0.8
81
30.7
Minor 5ss
37.8
-1.4
3
55.7
41.6
Minor BPS
60.9
0.43
1.9
80.05
42.1

Associated Gene:

Gene:
MTMR10
Ensembl Gene ID:
ENSAPLG00000006723
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007015
5560750 - 5593899
33150