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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5563147_5564524_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5563147 - 5564524
Intron Length:
1378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTTACTAAATC
Flanking Amino Acid:
CNHLKRSDKESPLFLMFLDC
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
78.1
32.2
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
91.8
0.94
0.6
84.7
30.2
Minor 5ss
39.7
-1.2
3.4
55.3
48.9
Minor BPS
65.6
0.47
1.8
79.2
36.3

Associated Gene:

Gene:
MTMR10
Ensembl Gene ID:
ENSAPLG00000006723
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007015
5560750 - 5593899
33150