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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5566213_5567063_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5566213 - 5567063
Intron Length:
851

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTAACAACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAACA
Flanking Amino Acid:
DVLQQRKIDQRICNAITRSH
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
75.1
41.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
62
0.27
1
55.8
38.8
Minor 5ss
40.5
-1.1
3.1
57.9
46.4
Minor BPS
80.5
0.95
1
83.59
30.1

Associated Gene:

Gene:
MTMR10
Ensembl Gene ID:
ENSAPLG00000006723
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007015
5560750 - 5593899
33150