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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5568061_5570519_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5568061 - 5570519
Intron Length:
2459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATG
Flanking Amino Acid:
EYVGEIYHNPAKKVNGIDPG
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.7
90.9
28.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86
0.81
0.6
80.7
31.3
Minor 5ss
39.3
-1.2
2.8
50.6
45.9
Minor BPS
78
0.74
1.1
78.3
32.8

Associated Gene:

Gene:
MTMR10
Ensembl Gene ID:
ENSAPLG00000006723
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007015
5560750 - 5593899
33150