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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5570611_5577329_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5570611 - 5577329
Intron Length:
6719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTATAT
5'SS Class:
major
3'SS Sequence:
ATTTATTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATGTATATAAAT
Flanking Amino Acid:
DEAGPESAKKVCLAIAHYSQ
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
72.3
33
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
77.4
0.62
0.8
70.2
40.4
Minor 5ss
45.8
-0.4
2.9
64.9
46.4
Minor BPS
48.9
-0
1.9
69.78
40.7

Associated Gene:

Gene:
MTMR10
Ensembl Gene ID:
ENSAPLG00000006723
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007015
5560750 - 5593899
33150