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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5577473_5579942_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5577473 - 5579942
Intron Length:
2470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TTTTCTTTACAG
Flanking Amino Acid:
PLTCIEQIVTVNDTKRKQKV
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75.9
35.2
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
92.4
0.95
0.6
87.4
23.1
Minor 5ss
39.6
-1.2
2.8
49.3
46.9
Minor BPS
63.6
0.29
1.8
72.3
40.7

Associated Gene:

Gene:
MTMR10
Ensembl Gene ID:
ENSAPLG00000006723
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007015
5560750 - 5593899
33150