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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5580016_5581538_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5580016 - 5581538
Intron Length:
1523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTAC
5'SS Class:
major
3'SS Sequence:
TCATGTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CTGCAATTAATA
Flanking Amino Acid:
MPLQKFHYKNLLLG
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
72.2
33.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76.1
0.59
1
72.7
42.1
Minor 5ss
42.9
-0.8
2.4
52.8
44.4
Minor BPS
48.7
-0.1
1.8
58.98
40.7

Associated Gene:

Gene:
MTMR10
Ensembl Gene ID:
ENSAPLG00000006723
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007015
5560750 - 5593899
33150