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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5581676_5593534_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5581676 - 5593534
Intron Length:
11859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TATAGGCTATTC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.5
32.7
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
85.8
0.8
0.7
85.1
29.7
Minor 5ss
34.9
-1.7
3.5
48.5
47.7
Minor BPS
35.1
-1.1
2.5
48.71
41.4

Associated Gene:

Gene:
MTMR10
Ensembl Gene ID:
ENSAPLG00000006723
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007015
5560750 - 5593899
33150