About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5593669_5594998_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5593669 - 5594998
Intron Length:
1330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAACCTAA
5'SS Class:
weak_major
3'SS Sequence:
TCCTGTGCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
AGCTTGTTAAAA
Flanking Amino Acid:
MGKMFRSDLCLTVG
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.9
0.16
1.3
56.8
38.8
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
69.6
0.44
0.9
60.8
40.3
Minor 5ss
54.5
0.15
2.5
69.8
42.3
Minor BPS
48.2
-0.1
2.1
59.16
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025093
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044572
5593512 - 5595012
1501