Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5607686_5609834_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5607686 - 5609834

Intron Length:

2149

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTATGTAAA

5'SS Class:

major

3'SS Sequence:

TGTTCCCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACCTAAT

U12 Branch Point Sequence:

AGGGACCTAATA

Flanking Amino Acid:

LLVNLLIAVFNNTFFEVKSI

Intron Amino Acid Position:

883

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.5

0.7

78.7

29.9

Major BPS

73.1

0.57

71.9

31.3

Major PPT

84.7

0.78

0.8

81.6

30.4

Minor 5ss

42.8

-0.8

2.5

50.6

40.3

Minor BPS

-0.3

1.9

52.25

39.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005599

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018859

5603372 - 5638723

35352

ENSAPLT00000005819

5603372 - 5638723

35352