Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5614441_5615583_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5614441 - 5615583

Intron Length:

1143

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGTCAT

5'SS Class:

major

3'SS Sequence:

ATCCTTTTTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATGAA

U12 Branch Point Sequence:

AAGTCCATAAAG

Flanking Amino Acid:

APIVKFWFYTISYLGYLMLF

Intron Amino Acid Position:

644

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

39.5

Major BPS

66.7

0.41

57.8

Major PPT

81.2

0.7

0.8

76.9

Minor 5ss

38.1

-1.3

3.1

55.9

42.3

Minor BPS

52.6

-0

1.8

57.81

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005599

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018859

5603372 - 5638723

35352

ENSAPLT00000005819

5603372 - 5638723

35352