Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5618557_5621075_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5618557 - 5621075

Intron Length:

2519

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTTGG

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCTTCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTAAA

U12 Branch Point Sequence:

TAAAGATTGATA

Flanking Amino Acid:

PKALKLLGMEDDEPPTKGKK

Intron Amino Acid Position:

386

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.04

0.8

78.8

38.3

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

87.2

0.84

0.7

80.4

31.6

Minor 5ss

39.6

-1.2

2.8

49.7

46.6

Minor BPS

44.3

-0.4

53.84

38.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005599

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018859

5603372 - 5638723

35352

ENSAPLT00000005819

5603372 - 5638723

35352