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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5626232_5628427_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5626232 - 5628427
Intron Length:
2196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGACAA
5'SS Class:
major
3'SS Sequence:
TTTTTAAATCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GCATTTTTAAAT
Flanking Amino Acid:
QIFVFGHHWPPLGSLTATEG
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
61.9
38.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.7
0.67
0.9
72
42
Minor 5ss
33.5
-1.9
3.2
45
43.6
Minor BPS
61.6
0.44
1.4
70.2
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005599
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005819
5603372 - 5638723
35352