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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5628529_5629376_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5628529 - 5629376
Intron Length:
848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGAAAT
U12 Branch Point Sequence:
AAATGCCAAATA
Flanking Amino Acid:
EMSILTALLKGTNASAPDQL
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
83.9
30.3
Major BPS
58.4
0.21
1.2
65
38.7
Major PPT
87.6
0.85
0.7
85.4
29.3
Minor 5ss
39.3
-1.2
3.3
57.3
47.4
Minor BPS
42.2
-0.5
2.2
52.5
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005599
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005819
5603372 - 5638723
35352