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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5632916_5635087_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5632916 - 5635087
Intron Length:
2172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCCTTTTTCATT
Flanking Amino Acid:
SFAHKYSEEGGVISESLRDQ
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
72.5
39.9
Major BPS
100
1.24
0.5
100
0
Major PPT
82.3
0.73
0.8
82
28.8
Minor 5ss
41.1
-1
3.1
48.2
47.3
Minor BPS
54.4
0.22
1.7
69.97
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005599
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018859
5603372 - 5638723
35352
ENSAPLT00000005819
5603372 - 5638723
35352