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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5791147_5791365_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5791147 - 5791365
Intron Length:
219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTGTTTTTGACT
Flanking Amino Acid:
KDDNDNTRLANLILSLEAKL
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
71.9
38
Major BPS
100
1.24
0.5
100
0
Major PPT
79.5
0.66
0.7
78.6
29
Minor 5ss
36.3
-1.6
3.2
50.3
39.7
Minor BPS
69.2
0.69
1.2
78.8
37.8

Associated Gene:

Gene:
OTUD7A
Ensembl Gene ID:
ENSAPLG00000006607
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006898
5787707 - 5839522
51816