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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5791481_5796008_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5791481 - 5796008
Intron Length:
4528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTTG
5'SS Class:
weak_major
3'SS Sequence:
TTCTCTACTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCAAT
U12 Branch Point Sequence:
TCTTCTCTACTT
Flanking Amino Acid:
MEQKDQQREQAVIPLTDSEH
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
41.2
Major BPS
59.5
0.24
1.3
68.4
35.9
Major PPT
84
0.77
0.7
81.9
28.4
Minor 5ss
62.5
0.42
2.3
72.7
44.5
Minor BPS
54
0.2
1.9
75.83
41.7

Associated Gene:

Gene:
OTUD7A
Ensembl Gene ID:
ENSAPLG00000006607
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006898
5787707 - 5839522
51816