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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5796159_5797704_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5796159 - 5797704
Intron Length:
1546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTAATAATAATA
Flanking Amino Acid:
DTMLRDSGGEAFAPIPFGGI
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
80
0.75
1
78.6
31
Major PPT
96.2
1.04
0.5
92.4
17.6
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
47.9
-0.1
1.8
63.09
36.6

Associated Gene:

Gene:
OTUD7A
Ensembl Gene ID:
ENSAPLG00000006607
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006898
5787707 - 5839522
51816