About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5802964_5810043_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5802964 - 5810043
Intron Length:
7080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTAAG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
ACCATTTTAACA
Flanking Amino Acid:
QATMVALEQAGRLNWWSTVC
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
74
38.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
86.9
0.83
0.7
84.4
30.5
Minor 5ss
28.2
-2.5
2.8
32
42.7
Minor BPS
60
0.31
1.3
61.32
39.3

Associated Gene:

Gene:
OTUD7A
Ensembl Gene ID:
ENSAPLG00000006607
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006898
5787707 - 5839522
51816