About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5813708_5823718_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5813708 - 5823718
Intron Length:
10011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAATAAT
U12 Branch Point Sequence:
ATGAGAATAATG
Flanking Amino Acid:
EPGLARDLLEGKNWDLTAAL
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
62.3
0.31
1.3
64.3
39.7
Major PPT
82.1
0.72
0.9
76.5
37.5
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
39.7
-0.9
2.1
44.68
41.3

Associated Gene:

Gene:
OTUD7A
Ensembl Gene ID:
ENSAPLG00000006607
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006898
5787707 - 5839522
51816