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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5949221_5950918_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5949221 - 5950918
Intron Length:
1698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
KVKIVACDGKNTGSNTAE*
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
100
1.24
0.5
100
0
Major PPT
89.4
0.89
0.7
81.6
35
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
GTF2A2
Ensembl Gene ID:
ENSAPLG00000006577
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006817
5948894 - 5953004
4111