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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5951046_5952317_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5951046 - 5952317
Intron Length:
1272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAGAA
U12 Branch Point Sequence:
GTCTTTTTAAAG
Flanking Amino Acid:
QRVRNRVNFRGSLNTYRFCD
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
71.9
36.1
Major BPS
62.2
0.3
1
59
38
Major PPT
77.2
0.61
1
78.1
34.2
Minor 5ss
35.6
-1.6
3.2
38
46.9
Minor BPS
59.9
0.17
1.5
60.52
41.6

Associated Gene:

Gene:
GTF2A2
Ensembl Gene ID:
ENSAPLG00000006577
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006817
5948894 - 5953004
4111