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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5952423_5952920_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5952423 - 5952920
Intron Length:
498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGGGGG
5'SS Class:
major
3'SS Sequence:
TAAACTACTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
LQESLDELIQSQQITPQLAL
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
55
44.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
68.4
0.41
1
63.8
42.1
Minor 5ss
22.1
-3.2
3.4
28.8
43.7
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
GTF2A2
Ensembl Gene ID:
ENSAPLG00000006577
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006817
5948894 - 5953004
4111