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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5961617_5961717_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5961617 - 5961717
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATATTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TGTTCTTCCACA
Flanking Amino Acid:
TLLAITKPFISSKFSQKIRY
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
79.7
29.1
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
81.6
0.71
0.8
76.4
32.3
Minor 5ss
41.6
-0.9
3.1
56.5
47.5
Minor BPS
55.9
0.18
2
72.25
39.9

Associated Gene:

Gene:
BNIP2
Ensembl Gene ID:
ENSAPLG00000006267
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006514
5957680 - 5967639
9960