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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5962473_5962738_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5962473 - 5962738
Intron Length:
266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CTTGCATTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTCCTTGCATT
Flanking Amino Acid:
NYRYLMDNLFKYVIGTLELL
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
80.7
33.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
79.9
0.67
0.9
73.3
36
Minor 5ss
37.6
-1.4
3
50.5
40
Minor BPS
53.2
0.18
1.9
78.06
38.6

Associated Gene:

Gene:
BNIP2
Ensembl Gene ID:
ENSAPLG00000006267
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006514
5957680 - 5967639
9960