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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5965736_5966728_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5965736 - 5966728
Intron Length:
993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCAAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAAAT
Flanking Amino Acid:
LAAAGTEGEAEVNGIKVRKK
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
82.6
29.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
77.3
0.61
0.9
71.9
37.2
Minor 5ss
37.2
-1.4
3
46.4
43
Minor BPS
66.1
0.58
1.6
85.04
35.1

Associated Gene:

Gene:
BNIP2
Ensembl Gene ID:
ENSAPLG00000006267
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006514
5957680 - 5967639
9960