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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_612930_620813_R

Intron Information:

Intron Rank:
139397
Intron Class:
major
Intron Phase:
Intron Coordinates:
612930 - 620813
Intron Length:
7884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAATC
5'SS Class:
major
3'SS Sequence:
TTGCTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
TGTGCAACAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
73.5
35.3
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
85.4
0.8
0.8
80.9
31.1
Minor 5ss
44.2
-0.6
2.8
61
43.5
Minor BPS
42.8
-0.4
2.1
65.14
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022468
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044153
611383 - 625653
14271