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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6158041_6163738_R

Intron Information:

Intron Rank:
131565
Intron Class:
major
Intron Phase:
Intron Coordinates:
6158041 - 6163738
Intron Length:
5698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTTATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
AATTCTTTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
78.8
0.65
1
74.2
40
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
72.6
0.69
1.3
75.53
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017990
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045682
6157780 - 6166569
8790