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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6163834_6165644_R

Intron Information:

Intron Rank:
131566
Intron Class:
major
Intron Phase:
Intron Coordinates:
6163834 - 6165644
Intron Length:
1811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTAA
5'SS Class:
major
3'SS Sequence:
ATTTTTTTCATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTTCTAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
66.9
34.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.2
0.77
0.7
80.6
30.8
Minor 5ss
41.5
-0.9
3.2
54.8
49.4
Minor BPS
68
0.64
1.6
82.74
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017990
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045682
6157780 - 6166569
8790