About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_620975_625491_R

Intron Information:

Intron Rank:
139398
Intron Class:
major
Intron Phase:
Intron Coordinates:
620975 - 625491
Intron Length:
4517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
CCTTTGTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
83.1
28.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
86.4
0.82
0.7
80
32
Minor 5ss
35
-1.7
2.8
42.6
38.5
Minor BPS
48.9
-0
2.3
70.48
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022468
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044153
611383 - 625653
14271