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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6244413_6245047_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6244413 - 6245047
Intron Length:
635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGAAG
5'SS Class:
strong_major
3'SS Sequence:
AATGTGCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATCTCTTAAAGT
Flanking Amino Acid:
FADRLYDSMKGKGTRDKVLI
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.6
42.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
66.9
0.38
1
59.3
42
Minor 5ss
30.2
-2.3
3.3
38.2
47
Minor BPS
54.7
0.23
2
73.4
44.1

Associated Gene:

Gene:
ANXA2
Ensembl Gene ID:
ENSAPLG00000006103
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019999
6242191 - 6263567
21377
ENSAPLT00000006375
6242191 - 6263567
21377