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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6247885_6248863_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6247885 - 6248863
Intron Length:
979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
ATACCTTTAATT
Flanking Amino Acid:
LSEINRVYREMYKTELEKDI
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.5
27.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
42.2
-0.9
2.7
50.9
39.6
Minor BPS
72.8
0.79
1.1
80.82
34.5

Associated Gene:

Gene:
ANXA2
Ensembl Gene ID:
ENSAPLG00000006103
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019999
6242191 - 6263567
21377
ENSAPLT00000006375
6242191 - 6263567
21377