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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6253972_6259920_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6253972 - 6259920
Intron Length:
5949

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TATGTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
ATTTCCTTAACT
Flanking Amino Acid:
AALEAAIKTKGVDEVTIINI
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.6
33.8
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
80.1
0.68
0.8
77.9
36.1
Minor 5ss
28.1
-2.5
3
34.6
41.4
Minor BPS
95.5
1.51
0.6
102.8
20

Associated Gene:

Gene:
ANXA2
Ensembl Gene ID:
ENSAPLG00000006103
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019999
6242191 - 6263567
21377
ENSAPLT00000006375
6242191 - 6263567
21377