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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6285197_6286322_R

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6285197 - 6286322
Intron Length:
1126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTAACGTGCCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTTTTTAACG
Flanking Amino Acid:
APQESMWKHKMTGVKGQSDT
Intron Amino Acid Position:
795

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1.2
85.3
32.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
58.6
0.19
1
50.5
43.5
Minor 5ss
35.7
-1.6
2.7
45.8
42.3
Minor BPS
82
0.87
1.1
82.56
32

Associated Gene:

Gene:
ICE2
Ensembl Gene ID:
ENSAPLG00000005981
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006214
6284803 - 6306853
22051