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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6287714_6287805_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6287714 - 6287805
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTCTTATCC
Flanking Amino Acid:
EILREKLGLIKPANSLNILH
Intron Amino Acid Position:
691

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
90.9
0.92
0.6
86.5
24.5
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
71.6
0.66
1.5
79.21
35.9

Associated Gene:

Gene:
ICE2
Ensembl Gene ID:
ENSAPLG00000005981
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006214
6284803 - 6306853
22051