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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6293547_6294788_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6293547 - 6294788
Intron Length:
1242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGCAT
5'SS Class:
major
3'SS Sequence:
TTCACTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTATTTTCACT
Flanking Amino Acid:
HSHKKKKDQKVVPIFLLPKL
Intron Amino Acid Position:
620

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
63.1
42.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
81.1
0.7
0.8
76.8
31.7
Minor 5ss
30.7
-2.2
3.6
46.8
48.5
Minor BPS
57.3
0.31
1.8
76.69
40.1

Associated Gene:

Gene:
ICE2
Ensembl Gene ID:
ENSAPLG00000005981
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006214
6284803 - 6306853
22051