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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6294968_6295549_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6294968 - 6295549
Intron Length:
582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
ATTTTTTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCATTTTCAATT
Flanking Amino Acid:
WTWLFQGVPKRKLPDELQML
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
75.1
35.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
85.7
0.8
0.7
81.4
30
Minor 5ss
37.3
-1.4
2.7
42.3
38.4
Minor BPS
59.3
0.37
1.5
72.06
39.7

Associated Gene:

Gene:
ICE2
Ensembl Gene ID:
ENSAPLG00000005981
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006214
6284803 - 6306853
22051