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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6299768_6301261_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6299768 - 6301261
Intron Length:
1494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTGTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
AACTTTTCAATT
Flanking Amino Acid:
PDKKASIMQNDISSDSNAEK
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
83.5
27.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
84.9
0.78
0.8
85.4
29.4
Minor 5ss
38.5
-1.3
2.8
50.4
39.3
Minor BPS
55
0.24
1.5
66.92
38.5

Associated Gene:

Gene:
ICE2
Ensembl Gene ID:
ENSAPLG00000005981
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006214
6284803 - 6306853
22051