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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6301379_6301737_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6301379 - 6301737
Intron Length:
359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATATCC
5'SS Class:
major
3'SS Sequence:
TATTTTCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
ATTTTCTTTAAG
Flanking Amino Acid:
FRLEKNLLVMGTAKYGKTYF
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
64.1
34.7
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
79.4
0.66
1
83.9
31.1
Minor 5ss
39.4
-1.2
3
49.2
41
Minor BPS
57.6
0.09
1.8
66.56
41.1

Associated Gene:

Gene:
ICE2
Ensembl Gene ID:
ENSAPLG00000005981
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006214
6284803 - 6306853
22051