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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_6305364_6306748_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6305364 - 6306748
Intron Length:
1385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATATA
5'SS Class:
strong_major
3'SS Sequence:
GATAAAATGAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
TTGCTGATAAAA
Flanking Amino Acid:
SLSELWNLSNREKFKPSA*
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
82.1
30.4
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
46.4
-0.2
1.2
38.7
42.3
Minor 5ss
44.8
-0.6
2.7
59.5
45.1
Minor BPS
43.3
-0.5
2.2
58.63
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024368
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035384
6305339 - 6308955
3617